Mutator

Module to mutate sequences based on a variants list.

Assumptions for which no check is performed:

• Only deletion insertion operations.

• Only exact locations, i.e., no uncertainties such as 10+?.

• Locations are zero-based right-open with start > end.

• There is no overlapping between variants locations.

Notes:

• If any of the above is not met, the result will be bogus.

• There can be empty inserted lists.

mutalyzer_mutator.mutator.mutate(sequences, variants)

Mutate the reference sequence under sequences["reference"] according to the provided variants operations.

Parameters

• sequences (dict) – Sequences dictionary.

• variants (list) – Operations list.

Returns

Mutated sequence.

Return type

str